2026-10-10T22:47:43Z https://www.scidb.cn/oai

10.57760/sciencedb.010fk 2026-09-17T11:22:59Z

2026-09-17 FindMe re-analysed nanopore sequencing samples HG002, HG003, HG004, HG007 (R10.4.1 5 kHz, Dorado 0.9.1 sup@v5.0.0) doi:10.57760/sciencedb.010fk en This dataset contains coordinate-sorted BAM files produced by re-basecalling the public Oxford Nanopore Technologies (ONT) R10.4.1 5 kHz raw signal for HG002, HG003, HG004, HG007. The raw signal originates from s3://ont-open-data/giab_2025.01/flowcells/HG002/; s3://ont-open-data/giab_2025.01/flowcells/HG003/; s3://ont-open-data/giab_2025.01/flowcells/HG004/; s3://ont-open-data/giab_2025.01/flowcells/HG007/. Dorado 0.9.1 was run with the basecalling model sup@v5.0.0 and its corresponding 5mCG/5hmCG modified-base model; the files carry MM/ML modified-base tags. Reads were aligned to the GRCh38 reference and then filtered with `samtools view -h -b -F 4079`, coordinate sorted with `samtools sort` and indexed. Each BAM is named after the sample, basecaller, version, model and processing mode. The data are intended for downstream evaluation of FindMe and as reusable basecalled nanopore whole-genome sequencing data. ONT nanopore sequencing; R10.4.1; 5 kHz; Dorado 0.9.1; HG002; HG003; HG004; HG007; GRCh38; whole-genome sequencing; modified-base calling; DNA methylation; MM/ML tags 陈文隽 PUBLIC https://mit-license.org dataset Science Data Bank