2026-10-15T01:43:10Z https://www.scidb.cn/oai

10.57760/sciencedb.j00196.00005 2023-03-14T16:50:23Z

2023-03-14 A demo dataset of genotype and phenotype for ALGWAS doi:10.57760/sciencedb.j00196.00005 en The genotypic file requires a header row, which shows the names of individuals. The first row shows the names of molecular markers or SNPs. For each SNP, the genotypes, e.g., AA, AT, TT, are required to transformed to integer format as 0, 1 or 2 based on allelic frequency. For example, A is the major allele that AA and TT will be transformed to 0 and 2, the AT is transformed to 1. It means the copy number of minor alleles for a line at a SNP locus, relative to major allele. The phenotype file must contain a header row, which represents the names of traits. The first column shows the names of the individuals (Table 2). The trait values are numeric and missing values are indicated as NA, following the R coding requirement. genome-wide association study; Adaptive Lasso; variable selection Wenyu Yang Chengxiu Wu Yingjie Xiao Jianbing Yan PUBLIC https://creativecommons.org/publicdomain/zero/1.0/ dataset http://www.doi.org/10.3724/SP.J.1006.2023.23072 Science Data Bank